Science blog

Exploring science at the British Library

80 posts categorized "Research"

23 August 2023

50 years on: Information Retrieval and the British Library

The logo of BLAISE, showing BLAISE in angular letters in white on blue, with the full title "British Library Automated Information Service" and the original "open book" British Library logo
The fiftieth anniversary of the foundation of the British Library is an opportunity to look back at the leading role the Library and its parent bodies played in introducing computerised information retrieval for science and medicine to the UK. Between 1965 and 1975 experiments in searching databases of medical research were carried out in partnership with the US National Library of Medicine (NLM)  together with computer scientists and medical users in the UK. Following the success of these experiments the Library launched BLAISE (British Library Automated Information Service)  as a national public service in 1977.

The NLM began publishing Index Medicus, an index of medical journal articles, in 1879. In 1960 printing was computerised and the machine readable data on tape became available for information retrieval. A publicly available US service, MEDLARS (Medical Literature Analysis and Retrieval System) opened in 1963 with MEDLINE  (MEDLARS online) going live in 1971. [1]

 In 1965 the NLM agreed with the National Lending Library for Science and Technology [2] to supply tapes in exchange for MEDLARS records of UK medical literature. With these tapes in hand the Office of Science and Technology Information [3]  funded Newcastle University to develop a retrieval package based on NLM’s IBM software to run on the university’s English Electric computer. Subsequent projects in 1973-74 tested the online environment and current awareness services with medical researchers and librarians in Leeds and Manchester over an online telephone link. [4]

The next step in service delivery was to establish online access to the NLM. University College London had set up a link to the US through ARPANET, the early version of the internet [5], and in 1973 British Library Research & Development [3] along with other public bodies, joined this network. This programme was historically significant as the first international communication over the internet. Project STEIN (Short Term Experimental Information Network) involved sixteen centres (e.g. the Royal Post-Graduate Medical School) each with its own terminal and trained intermediary.  The number of users (362) and searches (1217) was substantial and the study confirmed the need for intermediaries who were experienced in using the system and formulating searches. The clinicians and researchers who accompanied each session evaluated the results and gave feedback. Despite difficulties with telecoms, satisfaction was high as searches delivered articles that were new together with articles that were familiar to the users, thus increasing their confidence in the search. [6]

These encouraging results led the Library in 1977 to launch BLAISE, a fully supported public service providing Medline and databases for toxicology and cancer. Tapes were delivered monthly from Washington by diplomatic bag to a computer bureau in Harlow to run on an IBM 370 machine with NLM’s ELHILL retrieval software. Mounting tested software on an established bureau service meant that BLAISE went live within a year. Users benefited from the dedicated BLAISE PSS (Packet Switched Service) network and a support team that provided training, documentation and a help desk, alongside document supply from the British Library Lending Division at Boston Spa.[7] At first researchers and clinicians used Medline for checking references or keeping up to date but it has since become an essential tool for the evidence based medicine community to generate systematic reviews and contribute to the Cochrane Library.[8] From 1977 the Library was the sole provider of NLM databases in the UK but in a political decision in 1982 NLM, as a federal agency, was required to release its products to US online providers. With the ensuing competition BLAISE was no longer able to support a UK based service and it was relaunched as BLAISE-LINK, a UK portal for online access to NLM. Within a few years customers moved over to commercial online hosts and BLAISE-LINK closed. 

Today, the Library continues online healthcare with the publication of AMED (Allied and Complementary Medicine Database). This database supplements the coverage of Medline in areas such as alternative medicine, palliative care and rehabilitation. [9]

We have come a long way in fifty years.  In 1973 searching involved expensive telecoms and computer access, clumsy equipment  (who now remembers audio-acoustic couplers?) minimal records, complex Boolean search strings and the need for skilled medical librarians to navigate all these obstacles. Now, there is free access to the internet and PubMed, open access full text and sophisticated relevance searching empowering every user. Information has exploded:  in 1976, Medline and its associated files had 3.5 million records, by 2022, PubMed had 35 million. [10] 

References [BL shelfmark]

All URLs accessed on 7 July 2023.

[1] MEDLINE History. https://www.nlm.nih.gov/medline/medline_history.html

[2] The National Lending Library for Science and Technology (NLLST) was the predecessor of the British Library Lending Division and later, the Document Supply Centre. The service is currently available as British Library On Demand.

Barr, D. P. The National Lending Library for Science and Technology. Postgraduate Medical Journal42.493 (1966): 695. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2466097/pdf/postmedj00407-0003.pdf

[3] The Office of Science and Technology Information (OSTI) was the predecessor of British Library Research & Development which promoted and funded R&D by the UK library and information community until its merger with the Library and Information Commission in 1999.

Baxter, P. "The role of the British Library R&D department in supporting library and information research in the United Kingdom." Journal of the American Society for Information Science 36.4 (1985): 276. https://www.proquest.com/openview/77a69cbd42dd0412f39b217892f95ac2/1?pq-origsite=gscholar&cbl=1818555 

[4] Barraclough, E. Information Retrieval, its origins in Newcastle. http://history.cs.ncl.ac.uk/anniversaries/40th/webbook/infoRetrieval/index.html

Harley, A. J., and Elizabeth D. Barraclough. MEDLARS information retrieval in Britain. Postgraduate medical journal 42.484 (1966): 69. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2465839/pdf/postmedj00398-0003.pdf

[5] Kirstein, P. T. "Early experiences with the Arpanet and Internet in the United Kingdom." IEEE Annals of the History of Computing 21.1 (1999): 38-44. https://citeseerx.ist.psu.edu/doc/10.1.1.112.8527

Computer History – Internet history of the 1970s.  https://www.computerhistory.org/internethistory/1970s/

[6]  Holmes, P. A description of the British Library’s short-term experimental information network project. pp 231-237 - 1st International On-line Information Meeting, London 13-15 December 1977 / organised by On-line Review, the international journal of on-line information systems. (1977). Oxford ; New York: Learned Information. [available in the British Library at shelfmark 2719.x.4085 ]

Holmes, P. (1978). On-line information retrieval: An introduction and guide to the British Library's short-term experimental information network project / P.L. Holmes. Vol.2, Experimental use of medical information services. (Research and development reports (British Library) ; no.5397). London: British Library Research and Development Department. [available in the British Library at shelfmark 2113.560000F BLRDR 5397 ]

Trials were also made with other scientific and engineering databases on the Lockheed Dialog system.

(7) Holmes, P. L. The British Library Automated Information Service (BLAISE). Online Review 3.3 (1979): 265-274. https://www.emerald.com/insight/content/doi/10.1108/eb024003/full/html       

BLAISE also provided bibliographic databases for the British National Bibliography and the Library of Congress, finally closing in 2002.

[8] McKibbon, K. A. Evidence-based practice. Bulletin of the medical library association 86.3 (1998): 396. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC226388/pdf/mlab00092-0108.pdf

Cochrane Library. https://www.cochranelibrary.com/about/about-cochrane-reviews

[9] Allied and Complementary Medicine Database (AMED) https://www.ebsco.com/products/research-databases/allied-and-complementary-medicine-database-amed

[10] Miles, W. (1982). A history of the National Library of Medicine : The nation's treasury of medical knowledge. (NIH publication ; no.82-1904). Bethesda, Md.: U.S. Department of Health and Human Services, Public Health Service, National Institutes of Health, National Library of Medicine. [p.386 -3.5 m records, 1976] https://collections.nlm.nih.gov/bookviewer?PID=nlm:nlmuid-8218545-bk

PubMed Milestone - 35 Millionth Journal Citation Added. https://www.nlm.nih.gov/pubs/techbull/nd22/brief/nd22_pubmed_milestone.html

Further reading

Bourne, C., & Hahn, Trudi Bellardo. (2003). A history of online information services, 1963-1976, Cambridge, Mass. ; London: MIT. [Available in the British Library on open shelf: Humanities 2 Reading Room HUR 025.04]

Written by Richard Wakeford (Science Reference Specialist, Retired). Richard was a member of the BLAISE support team, 1981-1984.

07 May 2021

Wiley Digital Archive on history of science now available at the British Library

The words Wiley Digital Archive, with a logo of three books standing as if on a shelf
We are happy to announce that this week we have acquired the Wiley Digital Archives of several major learned societies. The collections currently available are those from the New York Academy of Sciences, the British Association for the Advancement of Science, the Royal Geographical Society, the Royal Anthropological Institute of Great Britain and Ireland, and the Royal College of Physicians. The database also includes scientific material from major British universities, digitised as part of the BAAS project.

Information in the archives includes field notes on Hausa Islamic law, beginners' lessons in the Mole language spoken in parts of Ghana, research for a government investigation into early-Victorian mine ventilation, reports on an earthquake in Erzerum, Turkey in 1859, a recipe for a "very rare and excellent" seventeenth-century "wound drink", and a huge range of maps. The Royal College of Physicians collections include a number of digitised incunabula and medieval printed books. For those items which might be harder to read, automated transcriptions are available.

Unfortunately the database cannot currently be used from outside the Library, but we are open again and any reader with an interest in the history of science is highly recommended to come in and try it out.

18 March 2021

Donald Michie: Interviewing Trofim Lysenko

A combined photograph shows the faces of two white men.
Left: Trofim Lysenko in 1938. Picture in public domain. Right: Donald Michie c. 1980s. (Add MS 88958/5/4). Reproduced with permission of the estate of Donald Michie.

In August 1957, a 33-year-old Donald Michie travelled across Europe to visit Moscow. The journey was a remarkable one. Driving through Germany and Poland in a 1948 Standard drop head coupé with his friend from Oxford, John Matheson, the pair had lively encounters with enthusiastic locals, a Polish hitchhiker, and even an offer for their car from a film director in Russia.i

Whilst visiting the Institute of Genetics in Moscow, Michie had a chance encounter with Trofim Lysenko, the infamous Soviet geneticist. Seizing the opportunity, a five-hour interview between the two and Lysenko’s colleagues ensued, with a transcript and reports following in British publications over the following 12 months. What had started out as the tour of a young socialist had turned into a golden chance to meet and interrogate the man at the centre of one of the greatest scientific controversies of the twentieth century.

The British scientific community was rocked in the 1940s and ‘50s by the rise of Lysenko to Director of the Institute of Genetics in Moscow. His theories and methods (both scientific and as a political figure) prompted resignations from scientific societies, radio broadcasts and journal articles denigrating him, and no small degree of infighting as people attempted to separate the emerging Cold War political divide from the scientific merits (or demerits) of his work. Michie, as a young geneticist forging his career in this time, found himself at the heart of this.

Lysenko was a neo-Lamarckist, arguing that characteristics acquired in response to the environment an organism lives in could then be passed on to future generations. The traditional view of the 1950s, based on the work of Gregor Mendel, was that the environment’s role was limited to accelerating or slowing down random mutations of genes. Lysenko’s belief in this view was not the only factor in driving controversy. The international scientific community was also concerned by the state endorsement of his science within the Soviet Union, prompting the disappearance, side-lining, or death of prominent critics, such as N. I. Vavilov. Lysenko’s precise liability remains an issue of contention to this day.

A photograph showing a group of white men and women in casual suits.
Michie’s visit to the Institute of Genetics. Left to right: Kosikov, Ružica Glavinic, John Matheson, Trofim Lysenko, Nuzhdin, Anne McLaren and Donald Michie. Reproduced with permission of the estate of Donald Michie.

Michie was carving out his career in genetics in the 1950s. By 1953, he had finished his DPhil in mammalian genetics under the supervision of E. B. Ford at Oxford. He then moved to work as a researcher at UCL alongside notable figures such as J. B. S. Haldane, Michie’s second wife and celebrated biologist Anne McLaren, and future Nobel Prize winner Peter Medawar. Michie had already dipped his toe in the waters of the Lysenko debate in a remarkable exchange of letters to an obscure rabbit breeders’ magazine, Fur and Feather, showing himself unafraid to side with controversy as he argued in favour of testing Lysenko’s theories.ii

The cover of a journal with masthead, the first page of text of the first article, and contents of the rest of the magazine.
First page of Donald Michie, ‘Interview with Lysenko’, Soviet Science Bulletin, V (1 & 2, 1958), 1-10. Add MS 89202/11/6

The interview with Lysenko revolved around a major theme from Michie: would Lysenko be prepared to share his methods, publish work in English and permit exchanges of personnel with Western institutions? Michie’s belief was that differences between the West and Soviet Union could be overcome through collaboration and openness, fostering a spirit of sharing knowledge. Lysenko agreed with the sentiment, responding:

I do not agree with this division into Western genetics and Soviet genetics. Science is unitary. I believe, and my colleagues believe, that science knows no frontiers.iii

Both Michie and Lysenko argued for letting scientific results win the debate, however they understood the obstacles in the way of that outcome rather differently. Lysenko saw bad faith and entrenched attitudes from Western scientists, believing them unwilling to entertain the possibility of Soviet scientists producing good research. Michie saw barriers to accessibility, such as the poor understanding of the Russian language in the West. He criticised the stubbornness of Lysenko and his colleagues to share their techniques and offer work for publication in English journals, whilst also castigating Western scientists for not engaging with the science and testing it rigorously and with an open mind.

Ultimately, Michie concluded from his meeting with Lysenko:

The only certain remedy that I can see is to reunite the genetical profession in a single scientific brotherhood irrespective of politics, nationality or genetical creed. … In more definite terms, Soviet and East European biologists must be willing to publish in Western journals and vice versa.iv

The question which follows is: Did Michie’s interview impact Lysenko’s reputation in Britain?

The short answer is probably not. For instance, Michie drew upon Lysenkoist scientists in a remarkable 1958 essay reflecting on 100 years since Charles Darwin’s On the Origin of Species.v The references to Lysenkoists were not well-received by reviewers, with them finding Michie’s piece out of step with the tone of the other essays in the collection. Lysenko’s reputation was, at least in the late 1950s, still entrenched negatively in the Western scientific world.

Shortly after these interventions, Michie drifted away from the world of genetics to pursue his long-standing interest in computers and artificial intelligence following his move to the University of Edinburgh in 1958. As such, his contributions on Lysenko petered out. He would go on to become one of the pioneers of artificial intelligence research in the United Kingdom. Never one to shy away from controversial topics, he found himself at the centre of the heated Lighthill debate in the 1970s concerning the funding of AI projects.

Lysenko’s reputation has largely remained contentious in the UK. Whilst there have been attempts to rehabilitate his science and separate it from his political reputation, such as by Chinese scientist Yongsheng Liu in the early 2000s, there is still a great deal of baggage associated with Lysenko.

Reflecting on the Lysenko controversy nearly 50 years later, Michie remarked:

Perhaps history is not after all a documented story of what probably happened. Rather, perhaps history is whatever tale of mystery and imagination becomes in the end too embedded to set straight.vi

Whilst this may have been one tale which Michie could not set straight, his open-mindedness and commitment to scientific exchange as an early-career researcher are admirable and fascinating to see in the face of such a controversial and fraught debate.

Matt Wright

Sources and Further Reading
Michie, D., ‘The Moscow Institute of Genetics’, Discovery, October 1957, pp. 432-434, p. 434. Available in Add MS 89202/11/6.
Michie, D., ‘Interview with Lysenko’, Soviet Science Bulletin, V (1 & 2, 1958), 1-10, p. 4. Available in Add MS 89202/11/6.
Michie, D., ‘The Third Stage in Genetics’, in A Century of Darwin, ed. By S. A. Barnett, (London: Heinemann, 1958), pp. 56-84.
Donald Michie to Judith Field, 14 July 2005, in London, British Library, uncatalogued digital collection.

Matt Wright is a PhD student at the University of Leeds and the British Library. He is on an AHRC Collaborative Doctoral Partnership researching the Donald Michie Archive, exploring his work as a geneticist and artificial intelligence researcher in post-war Britain.

Donald Michie at the British Library
The Donald Michie Papers at the British Library comprises of three separate tranches of material gifted to the library in 2004 and 2008. They consist of correspondence, notes, notebooks, offprints and photographs and are available to researchers through the British Library’s Explore Archives and Manuscripts catalogue at Add MS 88958, Add MS 88975 and Add MS 89072.

i Details of Michie’s trip driving across Europe in a 1948 Standard drop head coupé are available in Add MS 88958/3/21.
ii These letters are available in the Donald Michie archive: Add MS 88958/3/20.
iii Donald Michie, ‘Interview with Lysenko’, Soviet Science Bulletin, V (1 & 2, 1958), 1-10, p. 4. Available in Add MS 89202/11/6.
iv Donald Michie, ‘The Moscow Institute of Genetics’, Discovery, October 1957, pp. 432-434, p. 434.
v For more details, see Donald Michie, ‘The Third Stage in Genetics’, in A Century of Darwin, ed. By S. A. Barnett, (London: Heinemann, 1958), pp. 56-84.
vi Donald Michie to Judith Field, 14 July 2005, in London, British Library, uncatalogued digital collection.

16 March 2021

Three men, a tobacco plant disease, and a virus.

The past year has seen many a new word popping up in our languages: Furlough (from the Dutch ‘verlof’ or paid leave), social distancing, lockdown, you name it. Most of these have ‘gone viral’, just like the virus itself. And just like the virus itself the word ‘virus’ mutated over time.

The word ‘virus’ was long known in science, but it was not used to describe the pathogen we know it to be. That was the work of Dutch biologist Martinus Willem Beijerinck.

An elderly, balding man with spectacles sits at a lab bench with a microscope mounted on it.
Portrait of Martin Willem Beijerinck, Wikipedia Commons

 

Beijerinck was the third of three scientists who had worked on the tobacco mosaic disease, an infection that could devastate whole crops. He continued the work done on the disease by Adolf Mayer, former Director of the Agricultural Experiment Station at the Agricultural School in Wageningen where he himself was based. Meyer found that if a bacterium was the cause, there was something strange going on but he could not figure out what it was.

A photograph signed "Dr. Adolf Mayer" shows a youngish man with a moustache in nineteenth-century business attire.
Portrait of Adolf Meyer in 1875. Wikipedia Commons


The next step in the right direction was made by Russian botanist Dmitrii Ivanovsky He concluded that the tobacco mosaic disease is caused by something much smaller than a bacterium, because it had slipped through the finest filters of the time, that no bacterium could cross.

He published his findings in several publications, amongst which was an article entitled ‘Die Pockenkrankheit der Tabakspflantze’, published in Mémoires de l'Académie Impériale des Sciences de Saint-Pétersbourg in 1890.

A stamp with cyrillic lettering shows a man with a beard and a widow's peak, wearing a bow tie and overcoat.
Dmity Ivanovski, from a USSR postage stamp celebrating the centenary of his birth

 

Apparently this was not picked up by our third man, Beijerinck. He conducted similar research on the tobacco mosaic disease as Ivanovsky had done, but concluded there had to be a new form of infectious agent. Because it was soluble in water Beijerinck called it Contagium vivum fluidum and he called the pathogen ‘virus’ to distinguish it from bacteria.

He also suggested the new idea that viruses were only capable of reproducing in cells of other organisms. His hypothesis was confirmed a few years later, when electron microscopes became available. I am not sure whether Beijerinck lived to see this new type of kit, because he died in 1931, the year it was invented.

Text-only title page of a book, stamped for Groeningen University Library..
Title page of 'Verzamelde geschriften van M. W. Beijerinck ter gelegenheid van zijn 70sten verjaardag…' The Hague, 1940. 10761.i.33

 

Marja Kingma, Curator Germanic Collections.

References and further reading:

Beijerinck, Martinus Willem, Verzamelde geschriften van M. W. Beijerinck ter gelegenheid van zijn 70sten verjaardag ... uitgegeven door zijne vrienden en vereerders. (Delft, 1921-1940.) 6 vols. Shelfmark 12260.l.13.

Iterson Jr. , G. van, Dooren de Jong, L.E. den, Kluyver, A.J., Maritinus Willem Beijerinck. His life and his work. The Hague, 1940. Shelfmark 10761.i.33 Separate publication in English translation of part 2 of vol. 6 of 'Verzamelde geschriften'. Another edition was published in 1983 by Science Tech in Madison, Wisconsin. Shelfmark 85/11941

Iwanowski, D. (1892). "Über die Mosaikkrankheit der Tabakspflanze". Bulletin Scientifique Publié Par l'Académie Impériale des Sciences de Saint-Pétersbourg / Nouvelle Serie III (in German and Russian). 35: pp. 67–70. Translated into English in Johnson, J., Ed. (1942) Phytopathological classics No. 7, pp. 27–-30 Neither item held by the BL.

Zaitlin, Milton. The Discovery of the Causal Agent of the Tobacco Mosaic Disease. In: Discoveries in plant biology / S.D. Kung and S.F. Yang (Eds.). Hong Kong, 1998, Chapter 7, pp 105-110. Available at https://www.apsnet.org/edcenter/apsnetfeatures/Documents/1998/ZaitlinDiscoveryCausalAgentTobaccoMosaicVirus.pdf.

15 January 2021

zbMATH Open - mathematical database now free online

zbMATH Open - the first resource for mathematics. The logo is a white square containing a small grey square in the upper left corner and a larger red square in the lower right corner

We are very happy to hear that zbMATH, one of the most important bibliographic databases in the field of mathematics, is now freely available to all online. The database is run by FIZ Karlsruhe, the European Mathematical Society and the Heidelberg Academy of Arts and Sciences, and the funding to make it free to all was provided by the Joint Science Conference, the German national government organisation for science research funding and policy.

The database covers mathematics books and scholarly articles comprehensively since 1868, with some items from considerably earlier. It includes material from the paper abstracts journals Jahrbuch über die Fortschritte der Mathematik (1868-1945) and Zentralblatt für Mathematik (1931-2013). It can be searched by author and subject as normal, but also includes searching by mathematical formula and the subject-specific Mathematics Subject Classification. It includes not just abstracts, but independent reviews of the significance of important articles, although some of these are in German rather than English. It also has both forward and backward citation data. Where possible links to the online full-text item are provided.

The administrators are currently working on developing an API to allow content from zbMATH to be used in other digital information systems on an open access basis.

Anybody with an interest in mathematics is heartily recommended to try it out.

17 July 2020

Gilbert White's influence on science

18th July 2020 is the three hundredth anniversary of the birth of Gilbert White, the "parson-naturalist" best known for his pioneering work on the natural history and history of his parish of Sherborne, Hampshire. A number of posts are appearing on different British Library blogs to celebrate, but this post will discuss his influence on science to this day.

A stained glass window showing a man in a brown habit with a halo, in a country landscape surrounded by birds
Stained glass window commemorating White in Selborne church, showing St Francis of Assisi preaching to the birds. All the birds shown in the window are mentioned in White's writings. Photograph by Si Griffiths under a CC BY-SA 3.0 licence.


Prior to White's work most scientific biology was based around the study of dead or captive animals in scientists' studies. White, who has been described as "the first ecologist" preferred to observe the animals and plants around his home, over long periods of time. These practices inspired Charles Darwin, whose observations of the finches of the Galapagos Islands initially inspired his thoughts about evolution by natural selection. On a more popular scale, White's influence is seen by some as creating birdwatching as a hobby.

Although more laboratory-centric biologists have occassionally dismissed White-style naturalism as dilatanttish or twee, it has become increasingly important since the mid-twentieth-century, especially in the study of environmental conditions, and of animal behaviour - "ethology".

One of the oldest sites of long-term nature-observation studies in Britain has been Wytham Woods in Oxfordshire. Nicknamed the "laboratory with leaves", it was donated to Oxford University in 1942 by Colonel Raymond ffenell, although some observation had been carried out there since the 1920s. Colonel ffennell was a member of the wealthy and socially prominent German Jewish Schumacher family, who had become rich through his involvement in the South African gold-mining industry, and adopted his wife's surname to avoid anti-German prejudice during World War I. Ever since, a host of research projects have been carried out there on all kinds of animals and plants, as well as climate and soil conditions.

One of the most important discoveries to have been made through long-term environmental observation was the discovery of the damage caused to the environment by acid rain in North America, which came from Gene Likens' observational work at the Hubbard Brook Experimental Forest in New Hampshire, beginning in the 1960s. 

A wooden cabinet containing scientific equipment, on a wooden stand, stands in a sun-dappled forest
Equipment cabinet at Hubbard Brook containing apparatus used for continuous monitoring of a stream's pH. Used non-commercially with permission of USDA Forest Service.


A listing of current long-term environmental observation sites is maintained by the International Long Term Ecological Research Network (ILTER) on their database DEIMS-SDR (Dynamic Ecological Information Management System - Site and Dataset Registry). See also the review article by Hughes and others with links to many examples.

The modern science of animal behaviour, or ethology, was developed in the 1930s by Nikolaas Timbergen, Konrad Lorenz, and Karl von Frisch. All three did most of their research on domestic or captive animals, but the discipline would later see the importance of long-term observation of the behaviour of wild animals in their natural habitats. Three of the most famous practitioners of this were the so-called "Trimates", known for their observations of wild apes - Jane Goodall with chimpanzees in Tanzania, Dian Fossey with gorillas in Zaire and Rwanda, and Birute Galdikas with orang-utans in Indonesia. Another example which has achieved fame outside science, although not yet enough, is Dave Mech's disproof, from observations of wild wolves in Minnesota, of the outdated "alpha wolf" model of social dynamics in wolf packs, which has influenced a great deal of beliefs about dog-training and even human interactions, but was derived from observations of what turned out to be disfunctional behaviour in captive animals.

It is also possible to follow in White's footsteps yourself, by taking part in a citizen science project based on observing nature in your garden or in your wider local area. The Countryside Jobs Network maintains a list of opportunities, which aren't just in rural areas.

We hope that you look a bit more closely at the nature around you this weekend!

18 June 2020

Citizen Science and COVID-19

Your experience of the COVID-19 pandemic could be an important contribution to science. Researchers from diverse disciplinary backgrounds are keen to learn about your stories, insights, routines, thoughts and feelings. While some projects would be eager to receive diaries in the narrative style of Samuel Pepys or John Evelyn, others want more specific information in survey format.

Hand-drawn and painted cartoon illustrating various ways people have entertained themselves during lockdown
Illustration: Graham Newby, The British Library: Lockdown Rooms (3rd June 2020)

Citizen science engages self-selected members of the public in academic research that generates new knowledge and provides all participants with benefits. The engagement can vary from data gathering or participatory interpretation to shared research design. Different forms of citizen science can be referred to as public science, public participation in scientific research, community science, crowd-sourced science, distributed engagement with research and knowledge production, or trans-disciplinary research that integrates local, indigenous and academic knowledge.

Contributing to citizen science projects sustains a sense of control, sense of belonging (empowering feelings in and after isolation) and sense of being useful which are particularly important in uncertain times. According to the UK Environment Observation Framework, self-measured evidence is more trusted by people, and organisations that draw on data generated through citizen science are more trusted. Trust is linked to transparency. Better understanding of how scientific knowledge is produced, and having a role and responsibility in shaping the knowledge production process, are likely to enable citizen scientists to re-frame the often-uneasy relationship between society and science.

Scale is a distinctive feature of citizen science. The more people are engaged, the more comprehensive an understanding can be reached about the researched topic. The featured COVID-19 Symptom Study has become the largest public science project in the world in a matter of weeks:  3,881,488 citizen scientists are involved as of 18th June 2020. Big data allowed medics to develop an artificial intelligence diagnostic that can predict the likelihood of having COVID-19 based on the symptoms only: a vital tool indeed when testing is limited.

The citizen science initiatives highlighted here, COVID-19 Symptom Study, COVID-19 and You, and COVID Chronicles, may inspire you to contribute to them or find other projects where you can take an active role in developing better understanding of current and future epidemics.

COVID-19 Symptom Study
https://COVID.joinzoe.com/data
Epidemiology
Institutions: King's College London, ZOE
Launched: 25th March 2020
Your contribution helps you and researchers understand COVID-19 and the dynamics of the pandemic (UK, USA).
How: Submit your physical health status regularly.

COVID-19 and You
https://nquire.org.uk/mission/COVID-19-and-you/contribute
Social sciences
Institutions: The Open University, The Young Foundation
Launched: 7th April 2020
Your contribution helps you and researchers understand how COVID-19 is affecting households and communities across the world.
How: Fill in an online survey with choices and narratives.

In addition to supporting current research, your contribution could add to future inquiries as well. Collecting and archiving short personal stories ensures authentic data will be available when researchers in the future look back to us now with their research questions. Reliable data should be collected now, while we are still living in unprecedented times. It is especially important to record the experiences of people from less privileged backgrounds, in contrast to earlier pandemics where the voices of all but the upper and middle classes, and the political, legal and scholarly elite, have often been lost to history. COVID Chronicles, an archival initiative, is doing just that. COVID Chronicles is a joint project: BBC 4 PM collects and features some of the stories and The British Library archives them all for future academic inquiries.

COVID Chronicles
https://www.bbc.co.uk/news/entertainment-arts-52487414
History, social sciences
Institutions: BBC Radio 4, The British Library
Launched: 30th April 2020
Your contribution helps you and future researchers understand how people experience the COVID-19 pandemic in their daily life, at a personal level.
How: Submit a mini-essay (about 400 words) to BBC Radio 4 PM via e-mail: pm at bbc dot co dot uk. Your essay will be archived by The British Library and made available for future research.

The gradually easing lockdown and the anticipated long journey of national and global recovery generate a growing appetite to record, reflect on and analyse the COVID-19 epidemic's influence on our life. Not all "citizen science" projects observe high standards of privacy and ethical responsibility, however. Before joining in any research with public participation, consider the principles of citizen science suggested by the European Citizen Science Association and the questions below:

Five questions before joining a citizen science initiative

  1. Can you contact the researchers and the institution(s) they belong to with your questions and concerns?
  2. Is the research approach clear to you? In order words, is it clear to you what happens to your contribution, how it shapes the investigation and what new knowledge is expected?
  3. Is your privacy protected? In other words, is the privacy policy clear to you, including how you can opt out any time and be sure that your data are deleted?
  4. Are you contacted regularly about the progress of the research you are contributing to?
  5. Are you gaining new transferable skills, new knowledge, insights and other benefits by participating in the research?


Further reading:

Bicker, A., Sillitoe, P., Pottier, J. (eds) 2004. Investigating Local Knowledge: New Directions, New Approaches. Aldershot : Ashgate.
BL Shelfmark YC.2009.a.7651, Document Supply m04/38392

Citizen Science Resources related to COVID-19 pandemic (annotated list) https://www.citizenscience.org/COVID-19/
[Accessed 18th June 2020]

Curtis, V. 2018. Online citizen science and the widening of academia: distributed engagement with research and knowledge production. Basingstoke, Hampshire: Palgrave Macmillan.
Available as an ebook in British Library reading rooms.

Open University. 2019. Citizen Science and Global Biodiversity  (free online course) https://www.open.edu/openlearn/science-maths-technology/citizen-science-and-global-biodiversity/content-section-overview?active-tab=description-tab
[Accessed 18th June 2020]

Sillitoe, P. (ed). 2007. Local science vs global science: approaches to indigenous knowledge in international development. New York : Berghahn Books.
BL Shelfmark YC.2011.a.631, also available as an ebook in British Library reading rooms.

Written by Andrea Deri, Science Reference Team

Contributions from Polly Russell, Curator, COVID Chronicles, and Phil Hatfield, Head of the Eccles Centre for American Studies, are much appreciated.

 

07 May 2020

The Future of Research Outputs

By Susan Guthrie, Maja Maricevic and Catriona Manville

 

Earlier this year, the British Library and RAND Europe hosted a roundtable discussion on how research outputs – the different ways research can be disseminated – are changing. It brought together representatives from research funders, publishers, research institutes, government and universities to explore the issue and its implications.

Workshop participants discussed RAND Europe’s recent study for Research England that showed that researchers currently produce a diversity of output forms, the range of which is likely to increase. Although researchers expect to continue to produce journal articles and conference contributions, they also want and plan to diversify the outputs they produce, with a particular focus on those aimed at a wider, non-academic audience.

The British Library also presented its current work and experience in collecting, preserving and making accessible a range of research outputs such as research data, web and social media, as well as new and evolving output formats.

The discussion addressed the following five questions:

How do we define and identify a research output?

There are many different types of outputs from research, from traditional journal articles and books to more diverse examples such as computer code, artworks, blogs, datasets and peer review contributions. One of the challenges is to identify which are actually outputs for dissemination, and which represent a stage in the development of research on the pathway to producing those outputs. An example of the latter is a Github repository for managing and storing revisions of projects, which may be fluid and changing on an ongoing basis. Other products – for example social media exchanges – are a fixed point but may not represent a researcher’s final perspective on a topic, rather the emergence and discussion of views and ideas. This fluid and dynamic mix of different media emerging over time makes it challenging to understand what is a ‘research output’ as traditionally defined. 

Where does responsibility lie?

Research is increasingly global and research outputs may span national borders – hence, drawing lines between what is and what is not ‘UK research’ is not straightforward. There is a limit on the extent to which a full record of all research endeavour can be provided. Different stakeholders – libraries, funders, institutions, publishers – can either look to shape and drive desirable changes in behaviour or respond to changes as they emerge from the ‘bottom up’. Funders in particular have the potential to drive researcher actions through the use of incentives.

How do we manage quality control?

As the range and nature of outputs broaden, questions emerge around how to assess the quality of the outputs and decide what is part of the scientific record. Peer review, the current approach, has its weaknesses. A key test of the quality and rigour of research is the extent of uptake and use by the academic community over time. In that sense, the change in types of outputs makes little difference to the ultimate assessment of their quality. However, as the volume of research products increase, alongside increasing concerns over reproducibility, fake news and the reliability of evidence, being able to point to legitimate and reliable sources may be of increasing value.

Do we have the support infrastructure for now and the future?

The growing diversity of research outputs creates new challenges in relation to the complex infrastructure needed to support their review, dissemination and storage across different players in the field e.g. funders, publishers and libraries. Identifying areas in which an intervention could make systems more efficient and futureproof could help but needs to be better understood. Securing digital platforms for sharing and collaborating on research could be part of these interventions, as could increasing digital archiving for discovery and access.

What are some possible solutions?

DataCite logoPermanent digital links to research outputs, which act as unique IDs for outputs to enable their consistent identification and referencing, may be a key part of the solution. Ensuring their consistent use, however, is a potential challenge and an important route forward to help make this problem more tractable. Participants discussed the successful example of DataCite in establishing an international solution. AI may also be part of the solution, in terms of discoverability of outputs. However, there are potential risks associated with this, such as biases, and a lack of knowledge around the way information is curated and presented by algorithms (for example, when using Google Scholar). Linked to these technological solutions is the need for data literacy, within and beyond the research community, as well as creating a culture of openness and transparency across all stages of the research cycle.

The changing nature of research outputs has the potential to affect a wide range of organisations and people in the sector. Joined-up thinking and action could help. As the diversity of research outputs increases, we have to make choices. We can either be reactive, responding to needs and challenges as they emerge, or proactive, to help shape and guide the nature and effective preservation of research outputs. A more proactive stance could help drive research towards better practice in information storage, sharing and communication, but requires early action and shared goals at a sector level. Continued dialogue and sharing of views on this topic could be important to make sure these issues are appropriately and adequately addressed.

 

Dr Susan Guthrie and Dr Catriona Manville are research leaders in science and innovation policy at RAND Europe. Maja Maricevic is head of higher education and science at the British Library.

02 April 2020

Publishers offering coronavirus articles free.

A pair of hands in blue disposable gloves frames a green petri dish with a model coronavirus in the centre
Image by danielfoster437 under a CC-BY-NC-SA 2.0 license


As the coronavirus pandemic continues to dominate news and lock down our daily lives, most of the major academic publishers have agreed to make their relevant articles available free online, even if they would otherwise be published with a paywall. Here is a set of links to various publisher sites, whether you are working on it yourself or looking for something to pass the time with.

American Chemical Society

American College of Physicians

Brill

British Medical Journal

Cambridge University Press

Cell Press

Chinese Medical Association

Elsevier

Emerald

European Respiratory Society

F1000

Frontiers

Future Science Group

Healthcare Infection Society

IEEE

IET

Informa Pharma Intelligence

Institute of Physics

Journal of the American Medical Association

Karger

The Lancet

National Academy of Sciences

New England Journal of Medicine

Oxford University Press

Royal Society

SAGE

Science

Springer Nature

Wiley

Wolters Kluwer

01 April 2020

Clouds: How Luke Howard linked Weather Lore and Natural Philosophy

I wandered lonely as a cloud
That floats on high o'er vales and hills
When all at once I saw a crowd,
A host, of golden daffodils;
Beside the lake, beneath the trees,
Fluttering and dancing in the breeze.
   William Wordsworth

A greyscale image of a painting of a large fluffy cloud
Figure 1 Cumulus is one of the three main genera of cloud formations proposed by Luke Howard in 1802 and still used today. Image from Howard, L. 1832 (second edition). On the modification of clouds, etc. page 33. Philo. Mag. Pl. VI. Vol. XVII. DRT Digital Store 1393.k.16.(1.)

 William Wordsworth’s (1770-1850) ‘lonely as a cloud’ poem was conceived in April 1802 on a spring day walk in the Lake District. A few months later, in December 1802, a pharmacist and amateur meteorologist, Luke Howard (1772-1864) delivered a paper in London, on the dynamics of cloud formations. The two events were unrelated but their futures became intertwined. Howard’s essay ‘On the modifications of Clouds’ (1803) resonated deeply within learned circles, including arts and sciences. Clouds soon became the objects of fascination and scrutinizing attention. Articulating the order of the enigmatic sky-scape inspired poets, painters and scientists. The "lonely as a cloud" simile in Wordsworth’s poem, which he composed and published (1807) years after his Lake District walk, is also a nod to Howard’s ideas.  Within sciences a century later, the International Cloud Atlas (2017) of the World Meteorological Organization still draws on Howard’s taxonomy. 

 
What is it about Howard’s approach to clouds that made his essay so influential? Various characteristics have been identified so far; a few are highlighted here.
 
Howard likened cloud formations to the eloquence of human facial expression:
Clouds 'are subject to certain distinct modifications, produced by the general causes which effect all the variations of the atmosphere: they are commonly as good visible indications of the operation of these causes, as is the countenance of the state of a person's mind or body.' (Howard 1830:3)
By relating clouds to people, especially the face, the most personal feature of an individual, Howard captured the imagination of his readers: a truly powerful captatio benevolentiae at the time of growing interest in the self and its romantic reflections in the world.
 
In addition to making clouds personal, Howard drew on sources of knowledge that had authority on the weather in different parts of the society in the early 19th century England. One was popular knowledge or weather lore based on the practical knowledge of weather-wise farmers and mariners whose life depended on their ability of reading the clouds and other weather signs. The other was the theoretical knowledge of natural philosophers whose ambitions to account for weather changes employed experimental methods of the fledgling sciences.
'It is the frequent observation of the countenance of the sky, and of its connection with the present and ensuing phaenomena, that constitutes the antient [sic] and popular meteorology. The want of this branch of knowledge renders the prediction of the philosopher (who is attending only to his instruments may be said only to examine the pulse of the atmosphere) less generally successful than those of the weather-wise mariner or husbandman.' (Howard 1830:3)
Howard recognized the challenges of linking the two, translating between different ways of knowing, especially when mariners’ and farmers’ tacit knowledge was considered as  ‘incommunicable’:
'But as this experience is usually consigned only to the memory of the possessor [Howard refers here to mariners, farmers], in a confused mass of simple aphorisms, the skill resulting from it is in a manner of incommunicable; for, however valuable these links when in connexion with the rest of the chain, they often serve, when taken singly, only to mislead; and the power of connecting them, in order to form a judgement upon occasion, resides only in the mind before which their relations have passed, through perhaps imperceptibly, in review.' (Howard 1830:4)
The above description makes Howard a forerunner of the still on-going debate on the commensurability of practice-based and scientific knowledge.

Howard was fully aware of the obstacles presented by the isolation of different knowledge traditions and of the necessity of communication. This is why he proposed a common vocabulary:
'In order to enable the meteorologist to apply the key of analysis to the experience of others, as well as to record his own with brevity and precision, it may perhaps be allowable to introduce a methodical nomenclature, applicable to the various forms of suspended water, or, in other words, to the modification of cloud.'  (Howard 1830:4)
An image of three clouds of different types, described in the caption
Figure 2 Cirro-cumulus, cirro-stratus, cumulo-stratus, from top to down. Cirrus, stratus and cumulus, represent Howard’s three main genera of cloud formations. They can transform into each other and form composites. Image from Howards, L. 1832 (second edition). On the modification of clouds, etc. page 33. Philo. Mag. Pl. VII. Vol. XVII. DRT Digital Store 1393.k.16.(1.)

By linking practical knowledge and experimental scientific approaches, Howard highlighted an important similarity: both assumed order and predictability in the formation of clouds, or ‘nubification’, as Howard referred to the process. Both assumed that cloud formation was driven by many more factors than the ‘sport of winds’. Landscape features in the following example: when the morning sun warms up the mist, which sits in the valley as a stratus, formed during the night, a cloud can form as a nascent cumulus over the meadow, an indicator of fair weather:
‘At nebulae magis ima petunt, campoque recumbent.’ (But the clouds seek more the vales, and rest upon the plain)
Virgil Georgicon. Liber I. line 401 quoted in Howard on page 8 in the section of describing cirro-cumulus. (Translated by J.B. Greenough, 190)
Howard’s invocation of Virgil further strengthened his argument for connecting popular and scientific knowledge. Quotations from Virgil’s Georgics Book 1, that covers knowledge of farming and weather recognized in 1st century BC in ancient Rome, gave further credibility to practice-based knowledge. Howard’s readers who grew up on Latin antiquities recognized the Georgics as classic text and this familiarity may have given greater appeal to Howard’s ideas.
 
Howard’s cloud book is very short, only 32 pages, and illustrated with the author’s watercolours. The British Library holds three editions (1803, 1830, 1894), of which the second is digitized, and freely accessible remotely through Explore (Digital Store 1393.k.16.(1.))
 
Cloud spotting remains a passion, and Howard’s taxonomy of cirrus, stratus and cumulus still guides cloud observation in the 21st century.
This spring, in our isolation, looking up at the sky from our window, clouds may present the only contact we have with the natural world. The ever-changing cloud formations may give us both a sense of space and a sense of belongingness; even more so if we share our observations on citizen science initiatives, such as BBC Weather Watchers.
 
A photograph of a sky filled with fluffy cumulus clouds over the roofs of suburban houses
Figure 3 Sky-scape with cumulus over London (Photo: Andrea Deri, 31st March 2020)

In our bliss of solitude, dreaming on our couch with Wordsworth, may our wondering about clouds also extend to Luke Howard.
‘For oft, when on my couch I lie
In vacant or in pensive mood,
They flash upon that inward eye
Which is the bliss of solitude;
And then my heart with pleasure fills,
And dances with the daffodils.’
A handwritten poem on a piece of paper
Figure 4 A section of a hand-written manuscript of William Wordsworth's poem 'I wandered lonely as a cloud'. © The British Library Board 065858. BL Add. MS 47864

References:
Boon, R., 2014. The man who named the clouds. Science Museum Blog. https://blog.sciencemuseum.org.uk/the-man-who-named-the-clouds/ [Accessed 27 March 2020]
Brant, C., 2019. A cloud. European Romanticism in Association?: A pan-European organization bringing together individual researchers, scholarly associations and heritage institutions studying Romantic literature and culture.  https://www.euromanticism.org/a-cloud/ [Accessed 27 March 2020]
Hamblyn, R. 2001. The invention of clouds: how an amateur meteorologist forged the language of the skies. New York: Farrar, Straus and Giroux. British Library shelfmarks m02/13387, YK.2001.a.15194
Howard, L., [1830]. On the modification of clouds and on the Principles of their Production, Suspension, and Destruction: Being the Substance of an Essay read before the Askensian Society in the Session 1802-3, Second ed. Printed by Talor, Black-Horse-Road, Fleet Street, London. British Library shelfmark 1393.k.16.(1.) 
Pedgley, D.E., 2003. Luke Howard and his clouds. Weather 58, pp. 51–55. https://doi.org/10.1256/wea.157.02 [Accessed 27 March 2020]
Reno, S.T., 2017. Romantic Clouds: Climate, Affect, Hyperobjects Seth T. Reno, in: Robertson, B.P. (Ed.), Romantic Sustainability: Endurance and the Natural World, 1780-1830. Lexington Books, Chapter 3. British Library shelfmark YC.2016.a.11155 
P. Vergilius Maro, Georgics. Books One. J. B. Greenough, (ed.) Translated by J.B. Greenough into English, 1900 Text
http://www.perseus.tufts.edu/hopper/text?doc=Perseus%3Atext%3A1999.02.0058%3Abook%3D1%3Acard%3D393 [Accessed 27 March 2020]
Wordsworth, W., Kelliher, W.H., 1984. The manuscript of William Wordsworth’s poems, in two volumes (1807): a facsimile. British Library, London. British Library shelfmark Document Supply fGPB-46
 
Contributed by Andrea Deri, Science Reference Team

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